Hello! 😃
Introduction
Hello, and welcome to my personal “research blog,” on Persagen.com!
This forum will provide the occasional opportunity to share some of my thoughts regarding my scientific and technical passions: molecular genetics, cancer research, natural language computing, computational linguistics, information extraction/retrieval, knowledge stores, knowledge graphs, knowledge discovery, etc.
On a personal note, appended below is a list of some of the “Research News” topics that I follow through various sources: scientific journals, science and technical online sources (RSS), etc. I email the most informative ones [Claws Mail: searchable with mairix (man page], and have been doing so for many years.
Currently, this content exceeds 400 folders (with most of the content cross-referenced through Subject lines and threaded content), containing ~68,500+ articles.
If you have any comments on Persagen.com, my vision or my work please do not hesitate to contact me!
Sincerely,
–
Dr. Victoria A. Stuart, Ph.D.
Vancouver, B.C.
2017-09-02
[victoria@victoria 2_RESEARCH - NEWS]$ dp ## ~/.bashrc alias (d: date; p: pwd)
Sat Sep 2 11:52:41 PDT 2017
/home/victoria/Mail/2_RESEARCH - NEWS
[victoria@victoria 2_RESEARCH - NEWS]$ ls | sort
Acoustics
Ageing
Ageing - Calorie (Dietary) Restriction
Agriculture, Aquaculture, Fisheries
Ancient DNA; Ancient Protein
Anthropology, Archaeology
Transcriptome - RNA-seq
...
[SNIP! Deleted 2018-06-06 after updated list appended, below.]
...
Translational Science, Medicine
Transposons
USACEHR-Relevant Literature
Vaccines
Vision, Eyes, Sight
Wasps
Women in Science, Medicine
[victoria@victoria 2_RESEARCH - NEWS]$ ls | wc -l
402
[victoria@victoria 2_RESEARCH - NEWS]$ ls -R | wc -l
66558
[victoria@victoria 2_RESEARCH - NEWS]$
Update: 2018-06-06
[victoria@victoria 2_RESEARCH - NEWS]$ dp ## ~/.bashrc aliases -- d: date; p: pwd
Wed Jun 6 15:56:40 PDT 2018
/home/victoria/Mail/2_RESEARCH - NEWS
[victoria@victoria 2_RESEARCH - NEWS]$ ls -l * | wc -l
## ~70K folders, files (emails):
68647
[victoria@victoria 2_RESEARCH - NEWS]$ ls -l | wc -l
## ~410 interest areas:
408
[victoria@victoria 2_RESEARCH - NEWS]$ ls -l | head
total 2.4M
drwx------ 2 victoria victoria 4.0K Mar 29 09:29 Acoustics
drwx------ 2 victoria victoria 20K Jun 6 15:10 Ageing
drwx------ 2 victoria victoria 4.0K May 21 11:44 Ageing - Calorie (Dietary) Restriction
drwx------ 2 victoria victoria 4.0K Mar 29 09:29 Ageing - Senescence
drwx------ 2 victoria victoria 4.0K Mar 29 09:29 Agriculture, Aquaculture, Fisheries
drwx------ 2 victoria victoria 4.0K Mar 29 09:29 Ancient DNA; Ancient Protein
drwx------ 2 victoria victoria 20K Mar 29 09:29 Anthropology, Archaeology
drwx------ 2 victoria victoria 4.0K Mar 29 09:29 Ants
drwx------ 2 victoria victoria 4.0K Mar 29 09:29 Archaeology
[victoria@victoria 2_RESEARCH - NEWS]$ ls -l | sed -r -e 's/\drwx------ 2 victoria victoria.*:[0-9]{2}\s//g'
total 2356
Acoustics
Ageing
Ageing - Calorie (Dietary) Restriction
Ageing - Senescence
Agriculture, Aquaculture, Fisheries
Ancient DNA; Ancient Protein
Anthropology, Archaeology
Ants
Archaeology
ARO-Relevant Literature, News
arXiv, bioRxiv, viXra
Avian Flu
Bees - CCD
Bees - Genomics, Genetics
Bees - Misc
Biochemistry
Bioengineering (tissues ...), Regenerative Medicine
Bioinformatics, Computational Biology
Bioinformatics, Informatics - Job Requirements
Bioinformatics - Online Degrees
Bioinformatics - Online - JHU
Bioinformatics - Training
Biology
Biomarkers
Biophysics
Biotech
Biotech Companies
Bioterrorism, Biothreats, Biowar
Birds - Crows, Corvids, Ravens
Blogs - Scientific
Blood, Blood Disorders, Cardiac Health
Business, Industry
Canada - Research-Related
Cancer
Cancer - Genomic Variants
Cancer - Metastasis (EMT Transition ...)
Cancer Pathways, Networks
Careers
Catabolism - Autophagy; Phagosomes; Mitophagy
Catabolism - Lysosomes
Catabolism - Miscellaneous
Catabolism - Proteasome
Causality; Causal Relationships
Cell Biology
Cell Biology - Cell Lines
Cell Biology - Golgi
Cell Death - Apoptosis
Cell Death - Ferroptosis
Cell Death - Necroptosis [RIP1, RIP3, TNFα, ...]
Cell Death - Necrosis
Cell Death - Parthanatos
Cellular Growth & Development - General
Cellular Growth - Spatial (3D); Physical (mechanical force, stress)
Cellular, Metabolic Reprogramming
Cellular Signaling - Channels
Cellular Signaling - EGFR
Cellular Signaling - G-Proteins, GPCR
Cellular Signaling - HER2
Cellular Signaling - Hippo Pathway
Cellular Signaling - Immediate Early Genes
Cellular Signaling - Insulin-IGF Pathway
Cellular Signaling - MAPK-ERK Pathway
Cellular Signaling - Miscellaneous
Cellular Signaling - mTOR, mTORC1, mTORC2
Cellular Signaling - Noise
Cellular Signaling - Notch
Cellular Signaling - p16-cyclin D Pathway
Cellular Signaling - p38 MAPK (Stress Pathway)
Cellular Signaling - PGC-1α Pathway
Cellular Signaling - PI3K-Akt Pathway
Cellular Signaling - PIK3CA
Cellular Signaling - PINK1-parkin Pathway
Cellular Signaling - PTEN
Cellular Signaling - Ras, KRAS Pathways
Cellular Signaling - Ras-MAPK Pathway
Cellular Signaling - Receptors
Cellular Signaling - Receptors - TRPV1, TRPA1 ...
Cellular Signaling - SNAIL
Cellular Signaling - Sonic Hedgehog (SHH) Pathway
Cellular Signaling - STAT3
Cellular Signaling - STAT5
Cellular Signaling - Synthetic
Cellular Signaling - TGFβ Signaling Pathway
Cellular Signaling - Wnt-β-Catenin Pathway
Chaos
Chemistry
Chemistry - Biological Chemistry
Chemistry - Graphene
Chemistry - Green
Chemoprevention
Chemoprevention - Resveratrol
Chemoprevention - Resveratrol - Detrimental
Climate Change - Extinction
Climate Change - Extreme Weather; Droughts
Climate Change - Food Production, Availability
Climate Change - General
Climate Change - Ozone
Clinical Trials
Coagulopathy
Cognition
Computing - Cloud Computing
Computing - General
Computing - Quantum Computing
Computing - Software
Corpora
Crowdsourced Science
Cryoprotection
Cyberwarfare
Deep Learning, Neural Networks
Diet - Antioxidants, Flavonoids, Polyphenols
Diet - Antioxidants, Flavonoids, Polyphenols - Detrimental
Diet - Apples
Diet - Calcium
Diet - Celiac (Coeliac) Disease
Diet - Cereals
Diet - Cheese
Diet - Chocolate
Diet - Coffee, Tea
Diet - Detrimental (Grapefruit juice, ...)
Diet - Fats & Oils
Diet - Fats - Omegas
Diet - Fats - Omegas - Negative Effects
Diet - Fiber
Diet - Fish
Diet - Food Guides
Diet - Fruit, Vegetables, Berries
Diet - Grains
Diet - HCA (Heterocyclic Amines)
Diet - Herbs
Diet - Herbs - Detrimental
Diet - HFCS (glucose-fructose in Canada)
Diet - Honey
Diet - Intermittent Fasting; 5:2 Diet
Diet - Junk Food
Diet - Meat
Diet - Miscellaneous
Diet - Nutrigenomics, Nutrition
Diet - Nuts
Diet - Organic
Diet - Protein
Diet - Salt, Hypertension
Diet - Specific Diets (Mediterranean; ...)
Diet - Spices
Diet - Sugar, Carbohydrate (NOT HFCS)
Diet - Supplements - Detrimental
Diet - Supplements, Vitamins
Diet - Sweeteners [Splenda; Stevia; ...]
Diet - Vitamin D
Diet - Vitamin E
Diet - Wine
DNA Damage
DNA - Information Storage
DNA - Misc
DNA Repair
DNA - Repeat Sequences [not telomeres]
DNA Sequencing
Dogs, Wolves
Ecology; Environment - General
Endocrine Disruptors
Energy - Alternative (fuel cells; ...)
Energy - Biofuels (incl. EtOH)
Energy - Coal, Oil, Other Natural Resources
Energy - Incandescent Bulb Phase-out
Energy - Miscellaneous
Energy - Nuclear Power
Environment - Alberta Oil Sands
Environmental Disasters
Environmental Disasters - BP Oil Spill
Environmental Disasters - Chernobyl (Chornobyl)
Environmental Disasters - China
Environmental Disasters - Haiti - Cholera
Environmental Disasters - Hydrofracking
Environmental Disasters - Japan 2011
Environmental Health, Toxicology
Environment - Pollution
Environment - Waste Management
Epidemiology
Epigenetics; DNA Methylation; Transgenerational Effects
Ethics & Fraudulent Science
Evolution
Evolution - Speciation
Exposome
Forensic Science, Medicine
Gene Expression
Gene Therapy
Genetic Engineering
Genetic Engineering - CRISPR RNA-Guided Cas9 Nuclease, TALENs, TALEs
Genetic Engineering - Gene Drive
Genetic Engineering - MAGE, CAGE
Genetic Regulation
Genetics - De-extinction
Genetics - Miscellaneous
Genetic Testing
GenMAPP 2
Genomes - Individual
Genomes - Intra-Individual Variation
Genomics
Genomics - Cancer Genomes; TCGA; ...
Genomics Databases
Genomics - ENCODE, deCODE
Genomics - FANTOM
Genomics - Functional
Genomics - Functional - XIST
drwx------ 2 victoria victoria 4096 Aug 26 2015 Genomics - Gene Drive
Genomics - GenomeBC, Genome Canada
Genomics - Horizontal Gene, Disease Transfer
Genomics - Metagenomics
Genomics - Mosaicism
Genomics - Penetrance
Genomics - PPM (Personalized & Precision Medicine)
Genomics - Privacy
Genomics - Whole-Genome; Exome
Geology
Glycans, Glycoproteins, Carbohydrates
Grants, Science Funding
Graph Theory, Graphical Models
Guides - Posters, Talks, Authorship, Review
Hair, Skin
Health - Addiction, Alcohol, Nicotine, Drug Abuse ...
Health - Addiction - Vancouver Insite
Health - Bone
Health Care
Health - Disease
Health - Disease - Financial Cost
Health - Disease - Genomic Variants
Health - Exercise, Diet
Health - Exercise - Yoga
Health - Female
Health - Helminths (parasitic worms)
Health - Human-Related 'Horizontal' Disease Transfer
Health - Infants, Juveniles
Health - Male
Health - Racial, Cultural, Geographic Differences
Health - Sex Differences; Sexual Dimorphism
Health - Skin
Health - Surgery
Health - Transgender
Heterogeneity - Cellular, Genomic
HIV, AIDS
Hormones
Illusion - Optical, ...
Imaging - Quantum Dots
Imaging Technology
Immunity, Inflammation - General
Immunity, Inflammation - Sepsis
Immunity - TLR (Toll-Like Receptors)
Information Theory
Injury, Trauma, Pain, Treatment
Intelligence - AI - General (Artificial Intelligence, A.I.)
Intelligence - AI - IBM Watson
Intelligence - Biological
Interactomes
Journals - Access
Journals - Misc
Journals - Quality, Peer Review ...
Junk DNA (lncRNA, vlincRNA, ...), Pseudogenes ...
Kinases, Phosphatases
Language
Lists2Networks
Materials Science
Materials Science - Biosensors; Sensors
Materials Science - Plasmonic, Photonic
Mathematics - Fractals
Mathematics - General; Logic
Mathematics - PDE (Partial Differential Equations)
Membranes
Metabolism - Amino Acids
Metabolism - AMPK
Metabolism - Blood, Cardiovascular
Metabolism - Carbohydrate, Sugar
Metabolism - Cilia, Intraflagellar Transport, Tubulin
Metabolism - Circadian Rhythms; Chronobiology
Metabolism - Copper
Metabolism - Diabetes
Metabolism - DNA (Replication, ...)
Metabolism - Energy [not Metabolic Syndrome]
Metabolism - Glymphatic System
Metabolism - Iron
Metabolism - Lipids, Fatty Acids
Metabolism - Metabolizers (Individual Differences)
Metabolism - Miscellaneous
Metabolism - Models
Metabolism - NAD+, NADH, NADPH
Metabolism - Obesity, Metabolic Disease
Metabolism - Proteins
Metabolism - Sleep
Metabolome
Microarrays
Microbes - Archaebacteria; Extremophiles
Microbes - Behavior Caused By
Microbes - Biofilms, Quorum Sensing
Microbes - Bioremediation
Microbes - E. coli outbreak - Europe 2011
Microbes - Fecal Microbial Transplantation (FMT)
Microbes - Fungi, Yeast
Microbes - Microbial Forensics
Microbes - Microbiome
Microbes - Microbiome - Nonhuman
Microbes - Miscellaneous
Microbes - Pathogens, Parasites
Microbes - Pathogens, Parasites - Ebola
Microbes - Probiotic
Microbes - Virome
Microbes - Viruses
Microfluidics
Military, Terrorism
Mitochondria; Mitochondrial Genetics, Disease
mRNA Display
Music - Science-Related
Mutation (Mutagenesis, Mutation Rates; ...)
Mutation - Silent (Synonymous, 'Neutral')
Nanoparticles
Nanotechnology
Network Modelling - Metabolic
Neuroscience - Connectome
Neuroscience - Memory, Learning
Neuroscience, Neurobiology
NGS - de novo Assembly
NGS (Next-Generation Sequencing)
NLM - Correspondence (PubMed, PMC ...)
NLM - PubMed, PMC ...
Oceanography
ODE (Ordinary Differential Equations)
OHS (Occupational Health & Safety)
'Omics - Single-Cell
'Omics - Various Other
Ontologies [Gene Ontology ...]
Optogenetics
Origin of Life
Pathway Analysis - Various
Pathway Interaction Database
PCR - Methods
Peer Review; Open Science
People - Craig Venter
People - George Church
People - Michael P. Snyder
People - Noam Chomsky
Pharmaceutical
Pharmaceutical - Ibuprofen
Pharmaceutical - Metformin
Phenome
Pheromones
Phylogeny
Physics
Physics - Antimatter
Physics - Holographic Universe
Plants
Plants - Genetics, Genomics
Pollution
Polymerases
Privacy
Proteins - Chaperones; Folding, Mis-Folding, HSP
Proteins - Enzymes
Proteins - Miscellaneous
Proteins - Prions
Proteome
Psychology
Psychology - Genetics
Psychology - Light, Color
Quantitative Biology
RDF, Triples, Predications (PAS), SPARQL ...
Ribosomes
RNA - Exosomes
RNA - mRNA; miRNA; siRNA; RNAi; crRNA; lncRNA; ...
Robotics
Rodents
Rodents - Mole Rats
Science Communication
Science Policy
Science, Research - Miscellaneous
Senses - Smell; Olfaction; Taste, Hearing, Deafness; Touch
SETI; Extra-Terrestrial Life
Sex Determination, Gender Identity
Sirtuins
Social Media, Networking, Psychology, Trends ...
Space, Cosmology
Statistics, Probability
Statistics - Shoddy
Stem Cells
Stress - Environmental (Heat; Cold; ...)
Stress - Hypoxia; Anoxia
Stress - Oxidative (ROS ...)
Stress - Physiological, Cellular - ER Stress (Endoplasmic Reticulum)
Stress - Physiological, Cellular - General
Stress - PTSD
Stress - UPR (Unfolded Protein Response)
Synthetic Biology
Synthetic Biology - Computing
Synthetic Biology - Synthetic Life
Systems Biology
Telomeres; Telomere-Related Ageing
Toxicology
Transcription - Enhancers
Transcription Factors - NF-κB (NFkB)
Transcription Factors - Nrf2
Transcription, Transcription Factors, Translation
Transcriptome
Transcriptome - CAGE
Transcriptome - FISSEQ
Transcriptome - RNA-seq
Translational Science, Medicine
Transposons
USACEHR-Relevant Literature
Vaccines
Vision, Eyes, Sight
Wasps
Women in Science, Medicine
[victoria@victoria 2_RESEARCH - NEWS]$